Difference between revisions of "OMERO"

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== Setup ==
  
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=== Server ===
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* [https://docs.openmicroscopy.org/omero/5.6.3/sysadmins OMERO server SysAdmin documentation]
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** [https://docs.openmicroscopy.org/omero/5.4.3/sysadmins/cli/usergroup.html User/group management]
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* <code>systemctl status omero-server</code>
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* <code>systemctl status postgresql-11</code>
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* <code>omero admin diagnostics</code>
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* <code>omero config get</code>
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* <code>psql -d omero_database -h localhost -U db_user</code>
  
==Open Microscopy Environment==
 
  
===Omero Platform===
 
* OME Remote Objects (OMERO) is a modern client-server software platform for visualising, managing, and annotating biological image data. OMERO is a Java Enterprise application that provides integration, visualisation, management, and analysis of biological image data. The OMERO clients allow the scientist to remotely manage, view, annotate and measure multi-dimensional images from anywhere.
 
  
===Bio-Formats===
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=== todo ===
* Bio-Formats, the solution for reading and writing microscopy file formats. Bio-Formats is a standalone library for reading and writing microscopy file formats. It can be used from standard applications like ImageJ and MATLAB, or from you own code. Bio-Formats takes the hard work out of supporting multiple image file formats.
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* "WARNING: Your server has not been configured for production use. See https://docs.openmicroscopy.org/omero/latest/sysadmins/server-performance.html?highlight=poolsize
  
===Vis-Bio===
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=== Client/CLI ===
* An open-source biological visualization tool. VisBio provides 3D rendered views of multi-dimensional images that can be manipulated in 3D in real-time. It uploads and reads images to an original OME Server. We plan to have OMERO support in the next release.
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* [https://docs.openmicroscopy.org/omero/5.6.3/users OMERO server User documentation]
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* Install OMERO CLI using [https://docs.openmicroscopy.org/omero/latest/users/cli/installation.html these directions] and test for LDAP configuration success, otherwise will have to create/manage users groups manually

Latest revision as of 16:56, 12 January 2021

Setup

Server


todo

Client/CLI